| |

Gluten-Free Pumpkin Muffins with Protein and Chocolate Chips Recipe

Oh, I just have to tell you about these Gluten-Free Pumpkin Muffins with Protein and Chocolate Chips Recipe — they’re seriously a fall favorite in my kitchen! What makes these muffins so special is how they combine cozy pumpkin flavors with a boost of protein from collagen peptides, plus the fun surprise of gooey chocolate chips. I love whipping these up when I want something that’s both nourishing and indulgent, perfect for breakfast or a snack that feels like a treat without the guilt.

When I first tried this recipe, I was looking for something gluten-free but didn’t want to compromise taste or texture. And let me tell you, these muffins hit that sweet spot every time. You’ll find that they have just the right balance of moistness and a tender crumb, thanks to a little resting time before baking—a trick I discovered that really makes a difference!

🤍

Why You’ll Love This Recipe

  • Gluten-Free & High Protein: Perfect if you’re aiming to boost your protein intake while avoiding gluten.
  • Moist, Flavorful Texture: Thanks to the pumpkin puree and proper resting, these muffins never turn out dry.
  • Easy to Make: Only one bowl needed for wet and dry ingredients, and simple steps to follow.
  • Chocolate Chip Surprise: Your family or guests will love the melty chocolate chunks in every bite.

Ingredients You’ll Need

Each ingredient in this Gluten-Free Pumpkin Muffins with Protein and Chocolate Chips Recipe plays an important role, from the gluten-free flour that creates a tender base to pumpkin pie spice that adds seasonal warmth. Here are some of my tips for choosing the best ingredients for success.

  • Gluten free 1-to-1 flour: A store-bought blend works best; it simplifies substitution without extra tweaks.
  • Unflavored collagen peptides: These add a protein boost and moisture without changing flavor or texture.
  • Pumpkin pie spice: Freshly mixed or pre-made both work—this is where your muffins get their cozy fall vibe.
  • Baking powder and baking soda: Essential leaveners that help the muffins rise nicely.
  • Kosher salt: Balances sweetness and enhances overall flavor.
  • Pumpkin puree: Use pure pumpkin (not pie filling) for best results and authentic taste.
  • Eggs: They bind ingredients and help with the fluffy texture.
  • Coconut sugar: Adds a natural, caramel-like sweetness without overpowering the pumpkin flavor.
  • Avocado or refined coconut oil: These neutral oils keep the muffins moist without adding unwanted flavors.
  • Vanilla extract: Brings warmth and depth to the batter.
  • Paleo chocolate chips: Go for a high-quality chocolate chip suitable for your dietary needs—you’ll want melty pockets in every bite!
📝
Note: You’ll find the complete list of ingredients, along with their exact measurements, in the printable recipe card at the bottom of this post.

Variations

I love experimenting with this Gluten-Free Pumpkin Muffins with Protein and Chocolate Chips Recipe by tweaking the mix-ins or spices to suit the season or my mood. You should definitely feel free to personalize it—these muffins are a great base for creativity!

  • Add nuts or seeds: I sometimes toss in chopped pecans or walnuts for extra crunch and texture; it adds so much enjoyment.
  • Swap chocolate chips for dried fruit: If you want a less-sweet option, dried cranberries or cherries work beautifully.
  • Use different spices: Try a pinch of cinnamon only, or add a little ground ginger for a twist on classic pumpkin spice.
  • Make mini muffins: For parties or kids’ snacks, mini muffins bake faster and everyone loves bite-sized treats.

How to Make Gluten-Free Pumpkin Muffins with Protein and Chocolate Chips Recipe

Step 1: Prep your muffin tin and preheat the oven

Start by heating your oven to 375°F and lining a 12-cup muffin tin with paper liners. This simple prep step makes cleanup easier and ensures your muffins come out cleanly. While the oven warms up, you’re ready to mix ingredients—easy and efficient!

Step 2: Mix the dry ingredients

In a large bowl, whisk together the gluten-free flour, collagen peptides, pumpkin pie spice, baking powder, baking soda, and kosher salt. This helps combine everything evenly, so you won’t end up with clumps of baking powder or unevenly distributed spice. I’ve found that taking this little extra time really helps the muffins bake uniformly.

Step 3: Whisk the wet ingredients separately

Use another bowl to whisk pumpkin puree, eggs, coconut sugar, oil, and vanilla extract until smooth. It’s helpful to get this nice and smooth before combining so your batter won’t have little lumps of sugar or oil spots. Trust me—this makes the texture so much better!

Step 4: Combine wet and dry mixtures

Add the dry ingredients into the wet bowl and gently fold with a spatula just until some flour bits remain visible. Avoid overmixing here—that’s a lesson I learned the hard way, because too much stirring makes gluten-free muffins tough. This slower mix preserves a tender crumb.

Step 5: Fold in the chocolate chips and rest the batter

Stir in the paleo chocolate chips until the batter looks mostly smooth, then let it rest for 15 minutes. This resting step is a game changer for gluten-free baking; it lets the flour hydrate and the batter thicken, yielding fluffier muffins. I never skip this part now!

Step 6: Fill muffin cups and bake

Divide the batter evenly among the 12 muffin liners—about ¾ full each. Feel free to top with a few extra chocolate chips for that pretty, melty look. Bake for 22 to 25 minutes; you’ll notice the muffins are moist when done, so it’s crucial to let them cool in the pan for 15 minutes before removing. This keeps them from falling apart and maintains perfect texture.

👨‍🍳

Pro Tips for Making Gluten-Free Pumpkin Muffins with Protein and Chocolate Chips Recipe

  • Don’t skip the rest: Let the batter rest; it’s the secret to a tender texture in gluten-free baking.
  • Use quality collagen peptides: Unflavored collagen won’t overpower flavors but adds a protein punch.
  • Choose neutral oils: Refined coconut or avocado oil keep moisture without adding strong flavors.
  • Watch the baking time: Muffins keep cooking a bit after coming out of the oven; cooling before removal prevents crumbling.

How to Serve Gluten-Free Pumpkin Muffins with Protein and Chocolate Chips Recipe

The image shows a warm, soft muffin split in two halves, resting on light brown parchment paper inside a white bowl. The muffin has a golden-brown color with a slightly moist texture, dotted with dark, melted chocolate chips scattered inside each half. The fond pieces add a rich contrast to the warm brown crumb. The bowl sits on a white marbled surface with soft natural light highlighting the muffin's texture, emphasizing its fluffiness and chocolatey spots in a close-up view. Photo taken with an iphone --ar 4:5 --v 7

Garnishes

I often sprinkle a few extra chocolate chips on top right before baking—they melt beautifully and make the muffins look extra inviting. Sometimes I dust a tiny bit of cinnamon sugar as a finishing touch, adding a sparkly cozy vibe that I adore.

Side Dishes

These muffins pair wonderfully with a hot cup of coffee or chai tea for a relaxing morning. If you want to round out your breakfast, a simple green smoothie or a fresh fruit salad complements the spice and sweetness perfectly.

Creative Ways to Present

I’ve served these muffins in cute autumn-themed muffin liners at holiday brunches, adding pumpkin-shaped picks on top for fun flair. You could also stack them on a rustic wooden board with seasonal nuts and small pumpkins for a festive display that always impresses.

Make Ahead and Storage

Storing Leftovers

After they fully cool, I store leftover Gluten-Free Pumpkin Muffins with Protein and Chocolate Chips Recipe in an airtight container on the counter for up to three days. I’ve found this maintains moisture and flavor best without drying out.

Freezing

These muffins freeze beautifully! I wrap individual muffins tightly in plastic wrap, then place them in a freezer bag. When I want one, I just pop it in the fridge overnight to thaw or heat it gently in the microwave for a tasty quick snack.

Reheating

Reheating is simple: a quick 15-20 second zap in the microwave revives the warmth and gooey chocolate without drying out the muffin. If you prefer, 5 minutes in a 350°F oven wrapped in foil works great too, especially if you’ve frozen them.

FAQs

  1. Can I use regular flour instead of gluten-free flour?

    Absolutely! If you don’t need to be gluten-free, you can substitute all-purpose flour cup-for-cup. The texture may be slightly different, but these muffins will still turn out moist and delicious.

  2. What can I substitute for collagen peptides?

    If you don’t have collagen peptides, you can try adding vanilla or unflavored protein powder, but keep in mind it can affect the taste and texture slightly. Alternatively, omit it but expect a small change in structure.

  3. Can I make these muffins dairy-free?

    Yes! This recipe is naturally dairy-free when you use coconut or avocado oil and dairy-free chocolate chips, so it works well for dairy-sensitive eaters without any swaps needed.

  4. Why do I need to let the batter rest before baking?

    Resting allows the gluten-free flour and collagen peptides to fully hydrate, which creates a better texture and helps the muffins rise evenly without becoming dense.

Final Thoughts

This Gluten-Free Pumpkin Muffins with Protein and Chocolate Chips Recipe truly feels like a warm hug in muffin form to me. I always recommend it to friends looking for that perfect balance of healthy and indulgent that still tastes homemade and cozy. Give it a try, and I’m confident these muffins will become your new favorites to bake again and again!

Print
clock clock iconcutlery cutlery iconflag flag iconfolder folder iconinstagram instagram iconpinterest pinterest iconfacebook facebook iconprint print iconsquares squares iconheart heart iconheart solid heart solid icon

Gluten-Free Pumpkin Muffins with Protein and Chocolate Chips Recipe

5 Stars 4 Stars 3 Stars 2 Stars 1 Star 4.7 from 134 reviews
  • Author: Mia
  • Prep Time: 10 minutes
  • Cook Time: 25 minutes
  • Total Time: 50 minutes
  • Yield: 12 muffins
  • Category: Baking
  • Method: Baking
  • Cuisine: American
  • Diet: Gluten Free

Description

These Gluten Free Pumpkin Muffins are a deliciously moist and high-protein treat perfect for fall or anytime you crave a healthy, flavorful snack. Made with gluten-free flour and collagen peptides, they offer an excellent source of protein without sacrificing taste. The addition of paleo chocolate chips adds just the right touch of sweetness and texture, while the warm pumpkin pie spice creates a comforting autumn aroma. Easy to prepare and bake, these muffins are ideal for breakfast, snack, or dessert.


Ingredients

Dry Ingredients

  • 1 ¼ cup gluten free 1-to-1 flour (156g)
  • ½ cup unflavored collagen peptides (49g)
  • 1 tbsp pumpkin pie spice
  • 1 tsp baking powder
  • ¼ tsp baking soda
  • ½ tsp kosher salt

Wet Ingredients

  • 1 can pumpkin puree (15oz)
  • 2 large eggs
  • ½ cup coconut sugar (81g)
  • ¼ cup avocado oil or melted refined coconut oil
  • 1 tsp vanilla extract

Mix-Ins

  • 1 cup paleo chocolate chips (182g)


Instructions

  1. Preheat Oven and Prepare Muffin Tin: Preheat your oven to 375°F and line a 12-cup muffin tin with liners to prevent sticking.
  2. Mix Dry Ingredients: In a large bowl, whisk together the gluten free flour, collagen peptides, pumpkin pie spice, baking powder, baking soda, and kosher salt until evenly combined.
  3. Combine Wet Ingredients: In a separate large bowl, whisk the pumpkin puree, eggs, coconut sugar, avocado or refined coconut oil, and vanilla extract until the mixture is smooth and well blended.
  4. Combine Wet and Dry Mixtures: Add the dry ingredients to the wet ingredients and fold gently with a spatula. Stir only until some flour is still visible to prevent overmixing.
  5. Add Chocolate Chips and Rest Batter: Fold in the paleo chocolate chips carefully into the batter until no dry flour is visible. Allow the batter to rest for 15 minutes to hydrate the flour and improve texture.
  6. Portion and Bake: Divide the batter evenly into the 12 muffin cups. Optionally, top with a few extra chocolate chips for garnish. Bake in the preheated oven for 22-25 minutes until a toothpick inserted in the center comes out clean or with moist crumbs.
  7. Cool and Serve: Let the muffins cool in the tin for 15 minutes to set, then transfer to a wire rack to cool completely before enjoying. This resting time helps prevent crumbling due to their moist texture.

Notes

  • Using gluten free 1-to-1 flour ensures a texture similar to regular muffins but feel free to experiment with your preferred gluten free blend.
  • Do not over-mix the batter once combining ingredients to avoid dense muffins.
  • Resting the batter before baking improves moisture and crumb texture.
  • These muffins keep well stored in an airtight container for up to 3 days or can be frozen for up to 2 months.
  • For a dairy-free option, ensure chocolate chips are dairy-free and avoid using butter if substituting oil.
  • Adjust coconut sugar quantity according to sweetness preference.

Nutrition

  • Serving Size: 1 muffin
  • Calories: 170
  • Sugar: 9g
  • Sodium: 150mg
  • Fat: 8g
  • Saturated Fat: 2g
  • Unsaturated Fat: 6g
  • Trans Fat: 0g
  • Carbohydrates: 20g
  • Fiber: 3g
  • Protein: 8g
  • Cholesterol: 40mg

Similar Posts

Leave a Reply

Your email address will not be published. Required fields are marked *

Recipe rating 5 Stars 4 Stars 3 Stars 2 Stars 1 Star